remove the usage of context managers for setting BEAM and going from training to inference

This commit is contained in:
Francis Lata
2024-06-07 15:10:20 +00:00
parent 2db1b84f0e
commit 2c0ba8d322
+69 -66
View File
@@ -424,7 +424,6 @@ def train_unet3d():
return x.shard(GPUS, axis=0).realize(), y.shard(GPUS, axis=0), cookie
@TinyJit
@Tensor.train()
def train_step(model, x, y):
optim.zero_grad()
@@ -435,8 +434,6 @@ def train_unet3d():
optim.step()
return loss.realize()
@Tensor.train(mode=False)
@Tensor.inference_mode()
def eval_step(model, x, y):
y_hat, y = sliding_window_inference(model, x, y, gpus=GPUS)
y_hat, y = Tensor(y_hat), Tensor(y, requires_grad=False)
@@ -463,91 +460,97 @@ def train_unet3d():
preprocess_dataset(get_val_files(), PREPROCESSED_DIR, True)
for epoch in range(1, NUM_EPOCHS + 1):
with Context(BEAM=TRAIN_BEAM):
if epoch <= LR_WARMUP_EPOCHS and LR_WARMUP_EPOCHS > 0:
lr_warm_up(optim, LR_WARMUP_INIT_LR, LR, epoch, LR_WARMUP_EPOCHS)
Tensor.training = True
Tensor.no_grad = False
BEAM.value = TRAIN_BEAM
train_dataloader = batch_load_unet3d(PREPROCESSED_DIR / "train", batch_size=BS, val=False, shuffle=True, seed=SEED)
it = iter(tqdm(train_dataloader, total=SAMPLES_PER_EPOCH, desc=f"epoch {epoch}", disable=BENCHMARK))
i, proc = 0, data_get(it)
if epoch <= LR_WARMUP_EPOCHS and LR_WARMUP_EPOCHS > 0:
lr_warm_up(optim, LR_WARMUP_INIT_LR, LR, epoch, LR_WARMUP_EPOCHS)
prev_cookies = []
st = time.perf_counter()
train_dataloader = batch_load_unet3d(PREPROCESSED_DIR / "train", batch_size=BS, val=False, shuffle=True, seed=SEED)
it = iter(tqdm(train_dataloader, total=SAMPLES_PER_EPOCH, desc=f"epoch {epoch}", disable=BENCHMARK))
i, proc = 0, data_get(it)
while proc is not None:
GlobalCounters.reset()
prev_cookies = []
st = time.perf_counter()
loss, proc = train_step(model, proc[0], proc[1]), proc[2]
while proc is not None:
GlobalCounters.reset()
pt = time.perf_counter()
loss, proc = train_step(model, proc[0], proc[1]), proc[2]
if len(prev_cookies) == getenv("STORE_COOKIES", 1): prev_cookies = [] # free previous cookies after gpu work has been enqueued
try:
next_proc = data_get(it)
except StopIteration:
next_proc = None
pt = time.perf_counter()
dt = time.perf_counter()
if len(prev_cookies) == getenv("STORE_COOKIES", 1): prev_cookies = [] # free previous cookies after gpu work has been enqueued
try:
next_proc = data_get(it)
except StopIteration:
next_proc = None
device_str = loss.device if isinstance(loss.device, str) else f"{loss.device[0]} * {len(loss.device)}"
loss = loss.numpy().item()
dt = time.perf_counter()
cl = time.perf_counter()
device_str = loss.device if isinstance(loss.device, str) else f"{loss.device[0]} * {len(loss.device)}"
loss = loss.numpy().item()
if BENCHMARK: step_times.append(cl - st)
cl = time.perf_counter()
tqdm.write(
f"{i:5} {((cl - st)) * 1000.0:7.2f} ms run, {(pt - st) * 1000.0:7.2f} ms python, {(dt - pt) * 1000.0:6.2f} ms fetch data, "
f"{(cl - dt) * 1000.0:7.2f} ms {device_str}, {loss:5.2f} loss, {optim.lr.numpy()[0]:.6f} LR, "
f"{GlobalCounters.mem_used / 1e9:.2f} GB used, {GlobalCounters.global_ops * 1e-9 / (cl - st):9.2f} GFLOPS"
)
if BENCHMARK: step_times.append(cl - st)
if WANDB:
wandb.log({"lr": optim.lr.numpy(), "train/loss": loss, "train/step_time": cl - st, "train/python_time": pt - st, "train/data_time": dt - pt,
"train/cl_time": cl - dt, "train/GFLOPS": GlobalCounters.global_ops * 1e-9 / (cl - st), "epoch": epoch + (i + 1) / SAMPLES_PER_EPOCH})
tqdm.write(
f"{i:5} {((cl - st)) * 1000.0:7.2f} ms run, {(pt - st) * 1000.0:7.2f} ms python, {(dt - pt) * 1000.0:6.2f} ms fetch data, "
f"{(cl - dt) * 1000.0:7.2f} ms {device_str}, {loss:5.2f} loss, {optim.lr.numpy()[0]:.6f} LR, "
f"{GlobalCounters.mem_used / 1e9:.2f} GB used, {GlobalCounters.global_ops * 1e-9 / (cl - st):9.2f} GFLOPS"
)
st = cl
prev_cookies.append(proc)
proc, next_proc = next_proc, None # return old cookie
i += 1
if WANDB:
wandb.log({"lr": optim.lr.numpy(), "train/loss": loss, "train/step_time": cl - st, "train/python_time": pt - st, "train/data_time": dt - pt,
"train/cl_time": cl - dt, "train/GFLOPS": GlobalCounters.global_ops * 1e-9 / (cl - st), "epoch": epoch + (i + 1) / SAMPLES_PER_EPOCH})
if i == BENCHMARK:
median_step_time = sorted(step_times)[(BENCHMARK + 1) // 2] # in seconds
estimated_total_minutes = int(median_step_time * SAMPLES_PER_EPOCH * NUM_EPOCHS / 60)
print(f"Estimated training time: {estimated_total_minutes // 60}h{estimated_total_minutes % 60}m")
if (TRAIN_BEAM or EVAL_BEAM) and epoch == start_epoch: break
return
st = cl
prev_cookies.append(proc)
proc, next_proc = next_proc, None # return old cookie
i += 1
with Context(BEAM=EVAL_BEAM):
if epoch == next_eval_at:
train_step.reset()
if i == BENCHMARK:
median_step_time = sorted(step_times)[(BENCHMARK + 1) // 2] # in seconds
estimated_total_minutes = int(median_step_time * SAMPLES_PER_EPOCH * NUM_EPOCHS / 60)
print(f"Estimated training time: {estimated_total_minutes // 60}h{estimated_total_minutes % 60}m")
if (TRAIN_BEAM or EVAL_BEAM) and epoch == start_epoch: break
return
next_eval_at += evaluate_every
eval_loss = []
scores = []
if epoch == next_eval_at:
Tensor.training = False
Tensor.no_grad = True
BEAM.value = EVAL_BEAM
for x, y in tqdm(iterate(get_val_files(), preprocessed_dir=PREPROCESSED_DIR), total=VAL_DATASET_SIZE):
eval_loss_value, score = eval_step(model, x, y)
eval_loss.append(eval_loss_value)
scores.append(score)
train_step.reset()
scores = Tensor.mean(Tensor.stack(scores, dim=0), axis=0).numpy()
eval_loss = Tensor.mean(Tensor.stack(eval_loss, dim=0), axis=0).numpy()
next_eval_at += evaluate_every
eval_loss = []
scores = []
l1_dice, l2_dice = scores[0][-2], scores[0][-1]
mean_dice = (l2_dice + l1_dice) / 2
for x, y in tqdm(iterate(get_val_files(), preprocessed_dir=PREPROCESSED_DIR), total=VAL_DATASET_SIZE):
eval_loss_value, score = eval_step(model, x, y)
eval_loss.append(eval_loss_value)
scores.append(score)
tqdm.write(f"{l1_dice} L1 dice, {l2_dice} L2 dice, {mean_dice:.3f} mean_dice, {eval_loss:5.2f} eval_loss")
scores = Tensor.mean(Tensor.stack(scores, dim=0), axis=0).numpy()
eval_loss = Tensor.mean(Tensor.stack(eval_loss, dim=0), axis=0).numpy()
if WANDB:
wandb.log({"eval/loss": eval_loss, "eval/mean_dice": mean_dice, "epoch": epoch})
l1_dice, l2_dice = scores[0][-2], scores[0][-1]
mean_dice = (l2_dice + l1_dice) / 2
if mean_dice >= TARGET_METRIC:
is_successful = True
save_checkpoint(get_state_dict(model), f"./ckpts/unet3d.safe")
elif mean_dice < 1e-6:
print("Model diverging. Aborting.")
diverged = True
tqdm.write(f"{l1_dice} L1 dice, {l2_dice} L2 dice, {mean_dice:.3f} mean_dice, {eval_loss:5.2f} eval_loss")
if WANDB:
wandb.log({"eval/loss": eval_loss, "eval/mean_dice": mean_dice, "epoch": epoch})
if mean_dice >= TARGET_METRIC:
is_successful = True
save_checkpoint(get_state_dict(model), f"./ckpts/unet3d.safe")
elif mean_dice < 1e-6:
print("Model diverging. Aborting.")
diverged = True
if not is_successful and CKPT:
if WANDB and wandb.run is not None: